ImageSnippets / GloBI meeting date: 13 Aug 2021 attendees: Margaret, James, Jorrit notes: James: how to use rdf snippets from GloBI? Image Snippets manual downloads rdf snippets from GloBI data something. Alternatively, GloBI can manual upload data to Image Snippets. Long term would be automated download/update processes. James: we have existing tools to handle RDF, so having GloBI produce usable rdf would be nice. Jorrit: I prefer pull integrations - "Hollywood model: don't call us, we call you". Easier to offer some download products and allow others to access at their convenience. Margaret: suggest to start with (small) examples, work out the details. Then figure out how to do many of them. Interested to see what the subj / verb/ obj look like before thinking about dealing with much Import function? just posing question, what would interaction look like in our triple editor? for example what would be the subject/object? "which" switch (e.g., this is an image that depicts a sea turtle in which . . . ) alternative is that we just bring the triple in as is - and add it in editor ---but all needs to match an image account is: globi password is: seaturtle examples: * https://imgsnp.co/vadnk * https://imgsnp.co/kdf6c https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/inaturalist/README.txt - contains all sorts of existing integration or views into the indexed iNaturalist. https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/inaturalist/nanopub-sample.ttl - contains a small sample of nanopubs expressed in turt $ curl "https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/inaturalist/nanopub-sample.ttl" | head -n1 @prefix this: . @prefix sub: . @prefix np: . @prefix dcterms: . @prefix prov: . @prefix pav: . @prefix rdfs: . @prefix xsd: . @prefix obo: . @prefix geo: . sub:Head { this: np:hasAssertion sub:Assertion; np:hasProvenance sub:Provenance; np:hasPublicationInfo sub:Pubinfo; a np:Nanopublication . } sub:Assertion { sub:Interaction obo:RO_0000057 sub:Organism_1, sub:Organism_2; a obo:GO_0044419; geo:latitude 47.304924; geo:longitude 15.309792; prov:atTime "2015-01-28T12:27:00Z"^^xsd:dateTime . sub:Organism_1 obo:RO_0002444 sub:Organism_2; a ; rdfs:label "Stamnaria americana" . sub:Organism_2 a ; rdfs:label "Equisetum hyemale hyemale" . } sub:Provenance { sub:Assertion prov:wasDerivedFrom sub:Study . sub:Study dcterms:bibliographicCitation "Erwin Gruber. 2015. Stamnaria americana host to parasitic fungus Equisetum hyemale hyemale. iNaturalist.org. Accessed at <https://www.inaturalist.org/observations/1209879> on 09 Aug 2021." . } sub:Pubinfo { this: dcterms:license ; pav:createdBy ; prov:wasDerivedFrom . dcterms:bibliographicCitation "http://iNaturalist.org is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world." . } Is it possible to include the images in species interactions rdf/turtle provided by GloBI ? Can we do import from iNaturalist directly ? https://www.inaturalist.org/observations/1209879 https://www.inaturalist.org/observations/1209879.json https://www.inaturalist.org/observations/6549764 https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/inaturalist/nanopub.ttl.gz $ curl "https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/inaturalist/nanopub.ttl.gz" | gunzip | grep "observations/6549764" | tee seaturtle.ttl @prefix this: . @prefix sub: . @prefix np: . @prefix dcterms: . @prefix prov: . @prefix pav: . @prefix rdfs: . @prefix xsd: . @prefix obo: . @prefix geo: . sub:Head { this: np:hasAssertion sub:Assertion; np:hasProvenance sub:Provenance; np:hasPublicationInfo sub:Pubinfo; a np:Nanopublication . } sub:Assertion { sub:Interaction obo:RO_0000057 sub:Organism_1, sub:Organism_2; a obo:GO_0044419; geo:latitude 23.7400976244; geo:longitude -109.5501708984; prov:atTime "2011-09-05T00:00:00Z"^^xsd:dateTime . sub:Organism_1 obo:RO_0002437 sub:Organism_2; a ; rdfs:label "Sula leucogaster" . sub:Organism_2 a ; rdfs:label "Chelonia mydas" . } sub:Provenance { sub:Assertion prov:wasDerivedFrom sub:Study . sub:Study dcterms:bibliographicCitation "Ryan Terrill. 2011. Sula leucogaster interaction->riding on Chelonia mydas. iNaturalist.org. Accessed at <https://www.inaturalist.org/observations/6549764> on 09 Aug 2021." . } sub:Pubinfo { this: dcterms:license ; pav:createdBy ; prov:wasDerivedFrom . dcterms:bibliographicCitation "http://iNaturalist.org is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world." . } The GloBI translation/interpretation for iNaturalist observation fields can be found via the index configuration: via https://github.com/globalbioticinteractions/inaturalist https://github.com/globalbioticinteractions/inaturalist/blob/main/interaction_types.csv https://github.com/globalbioticinteractions/inaturalist/blob/main/interaction_types.csv#L124 Interaction->Riding On https://www.inaturalist.org/observation_fields/5029 interacts with http://purl.obolibrary.org/obo/RO_0002437 obo: http://purl.obolibrary.org/obo/ are there claims that don't have images where it be helpful for us the images. https://whereby.com/zeroexp https://github.com/globalbioticinteractions/globalbioticinteractions/issues/688#issuecomment-898631037 - please add changes to make the rdf to work and share. http://www.margaretwarren.us/leaf-studies - a gallery driven by a wordpress plugin to show images matching specific criteria. next steps: 1. Margaret / James - provide updated RDF snippet 2. Jorrit - review updated example and try to incorporate changes